NetworksLiterature.CommunityDetection History
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http://arxiv.org/abs/1012.2726  Rolebased similarity in directed networks]] by Kathryn Cooper, Mauricio Barahona
to:
[[http://arxiv.org/abs/1012.3409  Beyond Space For Spatial Networks]] by Paul Expert, Tim Evans, Vincent D. Blondel, Renaud Lambiotte
[[http://arxiv.org/abs/1012.2726  Rolebased similarity in directed networks]] by Kathryn Cooper, Mauricio Barahona
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http://arxiv.org/abs/1012.2726  Rolebased similarity in directed networks]] by Kathryn Cooper, Mauricio Barahona
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[[http://arxiv.org/abs/1012.2363  Finding statistically significant communities in networks]] by Andrea Lancichinetti, Filippo Radicchi, Jose' Javier Ramasco, Santo Fortunato
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[[http://arxiv.org/abs/1008.3926  Stochastic blockmodels and community structure in networks]] by Brian Karrer, M. E. J. Newman
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[[http://arxiv.org/abs/1005.4376  Characterizing the community structure of complex networks]] by Andrea Lancichinetti, Mikko Kivela, Jari Saramaki, Santo Fortunato
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http://arxiv.org/abs/1005.3265  Community extraction for social networks]] by Yunpeng Zhao, Elizaveta Levina, Ji Zhu
to:
[[http://arxiv.org/abs/1005.3265  Community extraction for social networks]] by Yunpeng Zhao, Elizaveta Levina, Ji Zhu
Added lines 1718:
http://arxiv.org/abs/1005.3265  Community extraction for social networks]] by Yunpeng Zhao, Elizaveta Levina, Ji Zhu
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http://arxiv.org/abs/1004.3539  Empirical Comparison of Algorithms for Network Community Detection]] by Jure Leskovec, Kevin J. Lang, Michael W. Mahoney
to:
[[http://arxiv.org/abs/1004.5283  Combinatorial approach to Modularity]] by Filippo Radicchi, Andrea Lancichinetti, José J. Ramasco
[[http://arxiv.org/abs/1004.3539  Empirical Comparison of Algorithms for Network Community Detection]] by Jure Leskovec, Kevin J. Lang, Michael W. Mahoney
Added lines 1718:
http://arxiv.org/abs/1004.3539  Empirical Comparison of Algorithms for Network Community Detection]] by Jure Leskovec, Kevin J. Lang, Michael W. Mahoney
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[[http://arxiv.org/abs/1002.1827  Detecting highly overlapping community structure by greedy clique expansion]] by Conrad Lee, Fergal Reid, Aaron McDaid, Neil Hurley
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[[http://www.pnas.org/content/106/50/21068.full.pdf A nonparametric view of network models and Newman–Girvan and other modularities]] by Peter J. Bickel and Aiyou Chen
Added lines 142145:
[[http://130.58.92.210/theses2010/GoodThesis.pdf  Modularity and Community Detection in Complex Networks]] by Benjamin H. Good (undergraduate thesis; has a couple of placeholders, so seemingly not quite final version)

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[[http://arxiv.org/abs/0911.4729  Hearing the clusters in a graph: A distributed algorithm]] by Tuhin Sahai, Alberto Speranzon, Andrzej Banaszuk
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[[http://arxiv.org/abs/0902.3788  Communities in Networks]] by Mason A. Porter, JukkaPekka Onnela, and Peter J. Mucha]] (arXiv:0902.3788)
[[http://arxiv.org/abs/0906.0612  Community detection in graphs]] by Santo Fortunato (arXiv:0906.0612)
to:
[[http://people.maths.ox.ac.uk/~porterm/papers/comnotices.pdf  Communities in Networks]] by Mason A. Porter, JukkaPekka Onnela, and Peter J. Mucha (Notices of the American Mathematical Society, Vol. 56, No. 9: 10821097, 11641166.)
[[http://arxiv.org/abs/0906.0612  Community Detection in graphs]] by Santo Fortunato (arXiv:0906.0612)
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[[http://arxiv.org/abs/0911.2735  Using network function to define and identify community structure]] by Sanjeev Chauhan, Michelle Girvan, Edward Ott
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[[http://arxiv.org/abs/0801.1647  Extending modularity definition for directed graphs with overlapping communities]] by Vincenzo Nicosia, Giuseppe Mangioni, Vincenza Carchiolo and Michele Malgeri
to:
[[http://www.iop.org/EJ/abstract/17425468/2009/03/P03024  Extending the definition of modularity to directed graphs with overlapping communities]] by Vincenzo Nicosia, Giuseppe Mangioni, Vincenza Carchiolo and Michele Malgeri
Added lines 1718:
[[http://arxiv.org/abs/0910.0165  The performance of modularity maximization in practical contexts]] by Benjamin H. Good, YvesAlexandre de Montjoye, Aaron Clauset
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[[http://arxiv.org/abs/0908.1062  Community detection algorithms: a comparative analysis]] by Andrea Lancichinetti, Santo Fortunato
Changed lines 810 from:
[[http://arxiv.org/abs/0906.0612  Community detection in graphs]] by Santo Fortunato (arXiv:0906.0612; this is Santo's massive review article)
[[http://arxiv.org/abs/0712.2716  Community Structure in Graphs]] by Santo Fortunato, Claudio Castellano
to:
[[http://arxiv.org/abs/0906.0612  Community detection in graphs]] by Santo Fortunato (arXiv:0906.0612)
[[http://arxiv.org/abs/0712.2716  Community Structure in Graphs]] by Santo Fortunato, Claudio Castellano (arXiv:0712.2716)
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[[http://arxiv.org/abs/0906.0612  Community detection in graphs]] by Santo Fortunato (arXiv:0906.0612; this is Santo's massive review article)
Added lines 1516:
[[http://www.stanford.edu/~jacksonm/netcommunity.pdf  Identifying Community Structures from Network Data via Maximum Likelihood Methods]] by Jernej ˇCopiˇc, Matthew O. Jackson, and Alan Kirman
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[[http://arxiv.org/abs/0902.3788  Communities in Networks]] by Mason A. Porter, JukkaPekka Onnela, and Peter J. Mucha]] (arXiv:0902.3788)
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[[http://arxiv.org/abs/0812.1242  Mapping change in large networks]] by M. Rosvall, C. T. Bergstrom
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[[http://arxiv.org/abs/0812.3030  Analysis of community structure in networks of correlated data]] by S. Gomez, P. Jensen, A. Arenas
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[[http://arxiv.org/abs/0812.1770  Dynamics and Modular Structure in Networks]] by R. Lambiotte, J.C. Delvenne, M. Barahona
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[[http://arxiv.org/abs/0812.1811  Stability of graph communities across time scales]] by J.C. Delvenne, S.N. Yaliraki, M. Barahona
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[[http://arxiv.org/abs/0812.1072  Multiresolution community detection for megascale networks by informationbased replica correlations]] by Peter Ronhovde and Zohar Nussinov
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[[http://arxiv.org/abs/0811.2329  Community detection in networks with positive and negative links]] by V.A. Traag, Jeroen Bruggeman
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[[http://arxiv.org/abs/0810.4412  How relevant are features for network structure?]] by Ginestra Bianconi, Paolo Pin, Matteo Marsili
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[[http://arxiv.org/abs/0810.3093  Detect overlapping and hierarchical community structure in networks]] by Huawei Shen, Xueqi Cheng, Kai Cai, MaoBin Hu
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[[http://arxiv.org/abs/0810.1355  Community Structure in Large Networks: Natural Cluster Sizes and the Absence of Large WellDefined Clusters]] by Jure Leskovec, Kevin J. Lang, Anirban Dasgupta, Michael W. Mahoney
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[[http://arxiv.org/abs/0809.4655  Animating the development of Social Networks over time using a dynamic extension of multidimensional scaling]] by Loet Leydesdorff, Thomas Schank, Andrea Scharnhorst, Wouter De Nooy
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[[http://arxiv.org/abs/0809.4418  Community structures and role detection in music networks]] by T. Teitelbaum, P. Balenzuela, P. Cano, J. M. Buldu
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[[http://arxiv.org/abs/0809.1398  http://arxiv.org/abs/0809.1398]] by Muhittin Mungan, Jose J. Ramasco
to:
[[http://arxiv.org/abs/0809.1398  Who is keeping you in that community?]] by Muhittin Mungan, Jose J. Ramasco
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[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000078000002026112000001&idtype=cvips&gifs=yes  Multistep greedy algorithm identifies community structure in realworld and computergenerated networks]] by Philipp Schuetz, Amedeo Caflisch
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[[http://arxiv.org/abs/0809.1398  http://arxiv.org/abs/0809.1398]] by Muhittin Mungan, Jose J. Ramasco
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[[http://arxiv.org/abs/0808.2633  Towards Real Time Community Detection in Large Network]] by Ian X.Y. Leung, Pan Hui, Pietro Lio', Jon Crowcroft
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[[http://arxiv.org/abs/0808.1612  Detecting groups of similar components in complex networks]] by J. Wang and C.H. Lai
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[[http://arxiv.org/abs/0808.0730  Trees = Networks ?!?]] by Luciano da Fontoura Costa, Francisco Aparecido Rodrigues
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[[http://deim.urv.cat/~aarenas/publicacions/pdf/motifs.pdf  Motifbased communities in complex networks]] by A. Arenas, A. Fernandez, S. Fortunato and S. Gomez [Journal of Physics A: Mathematical and Theoretical 41, 224001 (2008)]
Added lines 1314:
[[http://arxiv.org/abs/0808.0375  New approach to community detection in networks]] by A.D. Medus, C.O. Dorso (possible useful idea in this paper: notion of weak versus strong communities)
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[[http://arxiv.org/abs/0807.4052  Modularity clustering is forcedirected layout]] by Andreas Noack
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[[http://arxiv.org/abs/0807.2875  Characterization of Subgraphs Relationships and Distribution in Complex Networks]] by Lucas Antiqueira, Luciano da Fontoura Costa
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[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=CHAOEH000018000003033107000001&idtype=cvips&gifs=Yes  Particle competition for complex network community detection]] by Marcos G. Quiles, Liang Zhao, Ronaldo L. Alonso, and Roseli A. F. Romero
Added lines 3234:
[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000076000003036102000001&idtype=cvips&gifs=yes  Module identification in bipartite and directed networks]] by Roger Guimerà, Marta SalesPardo, and Luís A. Nunes Amaral
Added lines 1213:
[[http://arxiv.org/abs/0806.1896  Identification of community structure in networks with convex optimization]] by Roland Hildebrand
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insert link to Danon review article from 2005 (J. Stat. Mech.)
to:
[[http://www.iop.org/EJ/abstract/17425468/2005/09/P09008Comparing community structure identification]] by Danon, DiazGuilera, Duch & Arenas, J. Stat. Mech. (2005).
Added lines 1617:
[[http://www.pnas.org/cgi/content/abstract/104/1/36?ck=nckResolution limit in community detection]], Fortunato and Barthélemy, Proceedings of the National Academy of Sciences 104, 3641 (2007)
Added lines 1213:
[[http://www.pnas.org/cgi/reprint/105/23/7907 Optimal partition and effective dynamics of complex networks]] by Weinen E, Tiejun Li, and Eric VandenEijnden
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[[http://arxiv.org/abs/0805.4770  New benchmark in community detection]] by Andrea Lancichinetti, Santo Fortunato, Filippo Radicchi
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http://arxiv.org/abs/0805.1449  A sequential algorithm for fast clique percolation]] by Jussi M. Kumpula, Mikko Kivela, Kimmo Kaski, Jari Saramaki
to:
[[http://arxiv.org/abs/0805.1449  A sequential algorithm for fast clique percolation]] by Jussi M. Kumpula, Mikko Kivela, Kimmo Kaski, Jari Saramaki
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http://arxiv.org/abs/0805.1449  A sequential algorithm for fast clique percolation]] by Jussi M. Kumpula, Mikko Kivela, Kimmo Kaski, Jari Saramaki
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[[http://www.nature.com/nature/journal/v453/n7191/pdf/nature06830.pdf  Hierarchical structure and the prediction of missing links in networks]] by Aaron Clauset, Cristopher Moore, & M. E. J. Newman
to:
[[http://www.nature.com/nature/journal/v453/n7191/pdf/nature06830.pdf  Hierarchical structure and the prediction of missing links in networks]] by Aaron Clauset, Cristopher Moore, & M. E. J. Newman
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[[http://www.nature.com/nature/journal/v453/n7191/pdf/nature06830.pdf  Hierarchical structure and the prediction of missing links in networks]] by Aaron Clauset, Cristopher Moore, & M. E. J. Newman
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!!Note: [[~Mason]]: We should probably try separate the categories of methods papers and application papers
to:
Note: [[~Mason]]: We should probably try separate the categories of methods papers and application papers
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[[http://arxiv.org/abs/0804.4356  Community Evolution of Social Network: Feature, Algorithm and Model]] by Yi Wang, Bin Wu, Nan Du
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[[http://arxiv.org/abs/0804.3636  Overlapping Community Detection in Bipartite Networks]] by Nan Du, Bin Wu, Bai Wang, Yi Wang
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[[http://arxiv.org/abs/0804.3457  Detecting modules in dense weighted networks with the Potts method]] by Tapio Heimo, Jussi Kumpula, Kimmo Kaski, Jari Saramaki
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!!Note: [[~Mason]]: We should probably try separate the categories of methods papers and application papers

Changed lines 1113 from:
!!Research papers on community structure detection
to:
!!Research papers on community structure detection and applications of community detection
[[http://arxiv.org/abs/0801.2345  On the relationship between the structural and socioacademic communities of a coauthorship network]] by Marko A. Rodriguez and Alberto Pepe
Added lines 7273:
[[http://arxiv.org/abs/0803.3422  Organization of modular networks]] by S. N. Dorogovtsev, J. F. F. Mendes, A. N. Samukhin, A. Y. Zyuzin
Added lines 910:
[[http://arXiv.org/abs/condmat/0610077  Thermodynamics of community structure]] by Claire P. Massen, Jonathan P. K. Doye
Added lines 910:
[[http://arxiv.org/abs/0709.2108  Robustness of community structure in networks]] by Brian Karrer, Elizaveta Levina, M. E. J. Newman
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[[http://arxiv.org/abs/0803.2854  Searching for Communities in Bipartite Networks]] by Michael J. Barber, Margarida Faria, Ludwig Streit, Oleg Strogan
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[[http://arxiv.org/abs/0803.2548  An Improved Potts Model Applied to Community Detection]] by Peter Ronhovde and Zohar Nussinov (see also reference [24] in this paper)
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[[http://arxiv.org/abs/0801.1647  Extending modularity definition for directed graphs with overlapping communities]] by Vincenzo Nicosia, Giuseppe Mangioni, Vincenza Carchiolo and Michele Malgeri
Deleted lines 6566:
[[http://arxiv.org/abs/0801.1647  Extending modularity definition for directed graphs with overlapping communities]] by Vincenzo Nicosia, Giuseppe Mangioni, Vincenza Carchiolo and Michele Malgeri
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[[ http://arxiv.org/abs/0802.1218  Detecting the overlapping and hierarchical community structure of complex networks]] by Andrea Lancichinetti, Santo Fortunato, Janos Kertesz
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[[http://arxiv.org/abs/0801.3290  A dual assortative measure of community structure]] by Todd D. Kaplan, Stephanie Forrest (this papers discusses generalizing modularity to weighted networks with both positive and negative links)
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[[http://arxiv.org/abs/0801.1647  Extending modularity definition for directed graphs with overlapping communities]] by Vincenzo Nicosia, Giuseppe Mangioni, Vincenza Carchiolo and Michele Malgeri
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%white% [[http://fakeblogping5.infofake blog ping]], [[http://doorst5.infodoorst5]]; [[http://holiday100search.infoholiday 100 search]]: [[http://searcheslookup.infosearch lookup]]  [[http://searcheslookup.info/search.php?q=home+loanshome loans]]
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%white% [[http://fakeblogping5.infofake blog ping]], [[http://doorst5.infodoorst5]]; [[http://holiday100search.infoholiday 100 search]]: [[http://searcheslookup.infosearch lookup]]  [[http://searcheslookup.info/search.php?q=home+loanshome loans]]
Changed lines 12 from:
!!Papers on community structure detection
to:
!!Review articles on community detection
[[http://arxiv.org/abs/0712.2716  Community Structure in Graphs]] by Santo Fortunato, Claudio Castellano
insert link to Danon review article from 2005 (J. Stat. Mech.)
!!Research papers on community structure detection
Deleted line 54:
* review article (J Stat Mech, 2005) by Danon, et al
Changed line 41 from:
http://arxiv.org/abs/0710.0550  Community Detection in Complex Networks by Dynamical Simplex Evolution]] by V. Gudkov and V. Montealegre
to:
[[http://arxiv.org/abs/0710.0550  Community Detection in Complex Networks by Dynamical Simplex Evolution]] by V. Gudkov and V. Montealegre
Added lines 34:
[[http://arxiv.org/abs/0710.4867  Biclique Communities]] by Sune Lehmann, Martin Schwartz, and Lars Kai Hansen
Added lines 3940:
http://arxiv.org/abs/0710.0550  Community Detection in Complex Networks by Dynamical Simplex Evolution]] by V. Gudkov and V. Montealegre
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[[http://arxiv.org/abs/0710.0059  Motifbased communities in complex networks]] by Alex Arenas, Alberto Fernandez, Santo Fortunato, and Sergio Gomez
Changed lines 3334 from:
[[http://arxiv.org/abs/0709.4500  Community structure in directed networks]] by Eliazabth Lecht and Mark Newman]]
to:
[[http://arxiv.org/abs/0709.4500  Community structure in directed networks]] by Eliazabth Lecht and Mark Newman
[[http://arxiv.org/abs/0710.0117  The clustering coefficient and community structure of bipartite networks]] by Peng Zhang, Jinliang Wang, Xiaojia Li, Zengru Di, and Ying Fan
Added lines 3334:
[[http://arxiv.org/abs/0709.4500  Community structure in directed networks]] by Eliazabth Lecht and Mark Newman]]
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[[http://arxiv.org/abs/0709.3512  A Bayesian Approach to Network Modularity]] by Jake M. Hofman and Chris H. Wiggins
Changed lines 1920 from:
[[http://arxiv.org/pdf/physics/0605087  Finding community structure in networks using the eigenvectors of matrices (arxiv version; to appear in PRE)]] by Mark Newman
to:
[[http://arxiv.org/pdf/physics/0605087  Finding community structure in networks using the eigenvectors of matrices (arxiv version; has since appeared in PRE)]] by Mark Newman
Changed lines 16 from:
!!Papers on community structure per se
[[http://arxiv.org/pdf/physics/0605087  Finding community structure in networks using the eigenvectors of matrices (arxiv version; to appear in PRE)]] by Mark Newman
[[http://arxiv.org/abs/qbio.QM/0411033  Using diffusion on graphs and the information bottleneck]] by Etay Ziv et al. ([[https://sourceforge.net/project/showfiles.php?group_id=74309&package_id=149722  code via sourceforge]])
to:
!!Papers on community structure detection
[[http://arxiv.org/abs/0707.1616  Modularity and community detection in bipartite networks]] by Michael J. Barber
Deleted lines 815:
[[http://arXiv.org/abs/physics/0612035  An informationtheoretic framework for resolving community structure in complex networks]] by Martin Rosvall and Carl T. Bergstrom
[[http://arxiv.org/abs/0705.1679  Extracting the hierarchical organization of complex systems]] by M. SalesPardo, R. Guimera, A. Moreira, and L. Amaral
[[http://arxiv.org/abs/0704.3759  Identifying network communities with a high resolution]] by Jianhua Ruan and Weixiong Zhang
[[http://arxiv.org/abs/0705.4445  Quality Functions in Community Detection]] by Santo Fortunato
Added lines 1116:
[[http://arxiv.org/abs/0705.4445  Quality Functions in Community Detection]] by Santo Fortunato
[[http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PLEEE8000076000003036102000001&idtype=cvips&gifs=yes  Module identification in bipartite and directed networks]] by Roger Guimerà, Marta SalesPardo, and Luís A. Nunes Amaral
[[http://arxiv.org/abs/0708.0925  Emergence of communities in weighted networks]] by J.M. Kumpula, J.P. Onnela, J. Saramaki, K. Kaski, and J. Kertesz
Changed lines 1922 from:
[[http://arxiv.org/abs/0707.1616  Modularity and community detection in bipartite networks]] by Michael J. Barber
[[http://arxiv.org/abs/0708.0925  Emergence of communities in weighted networks]] by J.M. Kumpula, J.P. Onnela, J. Saramaki, K. Kaski, and J. Kertesz (Mason's note: there are several Oxford people on the author list here... I should go meet them)
to:
[[http://arxiv.org/pdf/physics/0605087  Finding community structure in networks using the eigenvectors of matrices (arxiv version; to appear in PRE)]] by Mark Newman
[[http://arXiv.org/abs/physics/0612035  An informationtheoretic framework for resolving community structure in complex networks]] by Martin Rosvall and Carl T. Bergstrom
Added lines 2530:
[[http://arxiv.org/abs/0704.3759  Identifying network communities with a high resolution]] by Jianhua Ruan and Weixiong Zhang
[[http://arxiv.org/abs/0705.1679  Extracting the hierarchical organization of complex systems]] by M. SalesPardo, R. Guimera, A. Moreira, and L. Amaral
[[http://arxiv.org/abs/qbio.QM/0411033  Using diffusion on graphs and the information bottleneck]] by Etay Ziv et al. ([[https://sourceforge.net/project/showfiles.php?group_id=74309&package_id=149722  code via sourceforge]])
Changed lines 4344 from:
[[http://arxiv.org/abs/0708.0958  Role models for complex networks]] by Joerg Reichardt and Douglas R. White
to:
[[http://arxiv.org/abs/physics/0702015  Size reduction of complex networks preserving modularity]] by A. Arenas, J. Duch, A. Fernandez, and S. Gomez (note: includes discussion relating directed modularity to undirected modularity)
Deleted lines 4649:
[[http://arXiv.org/abs/physics/0701151  Module identification in bipartite networks with applications to directed networks]] by R. Guimera, M. SalesPardo, L.A.N. Amaral
[[http://arxiv.org/abs/physics/0702015  Size reduction of complex networks preserving modularity]] by A. Arenas, J. Duch, A. Fernandez, and S. Gomez (note: includes discussion relating directed modularity to undirected modularity)
Added lines 4950:
[[http://arxiv.org/abs/0708.0958  Role models for complex networks]] by Joerg Reichardt and Douglas R. White
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[[http://arxiv.org/abs/0707.0609  Maps of Information Flow Reveal Community Structure In Complex Networks]] by M. Rosvall and C. T. Bergstrom
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[[http://arxiv.org/abs/0708.0958  Role models for complex networks]] by Joerg Reichardt and Douglas R. White
Added lines 2526:
[[http://arxiv.org/abs/0708.0925  Emergence of communities in weighted networks]] by J.M. Kumpula, J.P. Onnela, J. Saramaki, K. Kaski, and J. Kertesz (Mason's note: there are several Oxford people on the author list here... I should go meet them)
Changed line 31 from:
* various articles by Mark Newman and/or Michell Girvan
to:
* various articles by Mark Newman and/or Michelle Girvan
Added lines 2324:
[[http://arxiv.org/abs/0707.1616  Modularity and community detection in bipartite networks]] by Michael J. Barber
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[[http://arxiv.org/abs/0707.1646  Fuzzy communities and the concept of bridgeness in complex networks]] by Tamás Nepusz, Andrea Petróczi, László Négyessy, and Fülöp Bazsó
Changed lines 1516 from:
[[http://arxiv.org/abs/0704.3759  Identifying network communities with a high resolution]] by Jianhua Ruan, Weixiong Zhang
to:
[[http://arxiv.org/abs/0704.3759  Identifying network communities with a high resolution]] by Jianhua Ruan and Weixiong Zhang
Added lines 1920:
[[http://arxiv.org/abs/0707.0756  Communicability in complex networks]] by Ernesto Estrada and Naomichi Hatano
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[[http://arxiv.org/abs/0705.4445  Quality Functions in Community Detection]] by Santo Fortunato
Added lines 1516:
[[http://arxiv.org/abs/0704.3759  Identifying network communities with a high resolution]] by Jianhua Ruan, Weixiong Zhang]]
Changed lines 1314 from:
to:
[[http://arxiv.org/abs/0705.1679  Extracting the hierarchical organization of complex systems]] by M. SalesPardo, R. Guimera, A. Moreira, and L. Amaral
Added lines 3233:
[[http://arxiv.org/abs/physics/0703248  Directed network modules]] by Gergely Palla, Illes J. Farkas, Peter Pollner, Imre Derenyi, Tamas Vicsek
Added lines 3031:
[[http://arxiv.org/abs/physics/0702015  Size reduction of complex networks preserving modularity]] by A. Arenas, J. Duch, A. Fernandez, and S. Gomez (note: includes discussion relating directed modularity to undirected modularity)
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!!Papers on community structure per se
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to:
Changed lines 2029 from:
to:
* BagrowBollt

!!Papers on modules/connectivity in networks but not necessarily on community structure
[[http://arxiv.org/pdf/physics/0701149  Classes of complex networks defined by roletorole connectivity profiles]] by R. Guimera, M. SalesPardo, L.A.N. Amaral [link is to arxiv version; journal ref is Nature Physics 3, 6369 (2007)]
[[http://arXiv.org/abs/physics/0701151  Module identification in bipartite networks with applications to directed networks]] by R. Guimera, M. SalesPardo, L.A.N. Amaral
Changed lines 34 from:
[[http://arxiv.org/abs/qbio.QM/0411033  Using diffusion on graphs and the information bottleneck ]] by Etay Ziv et al. ([[https://sourceforge.net/project/showfiles.php?group_id=74309&package_id=149722  code via sourceforge]])
to:
[[http://arxiv.org/abs/qbio.QM/0411033  Using diffusion on graphs and the information bottleneck]] by Etay Ziv et al. ([[https://sourceforge.net/project/showfiles.php?group_id=74309&package_id=149722  code via sourceforge]])
Added lines 917:
[[http://arXiv.org/abs/physics/0612035  An informationtheoretic framework for resolving community structure in complex networks]] by Martin Rosvall and Carl T. Bergstrom

Need to add links to the following:
* various articles by Mark Newman and/or Michell Girvan * review article (J Stat Mech, 2005) by Danon, et al * BagrowBollt
Changed lines 13 from:
[[http://arxiv.org/pdf/physics/0605087  Finding community structure in networks using the eigenvectors of matrices]] by Mark Newman
[[http://arxiv.org/abs/qbio.QM/0411033  Using diffusion on graphs and the information bottleneck ]] by Etay Ziv et al. ([[https://sourceforge.net/project/showfiles.php?group_id=74309&package_id=149722  code via sourceforge]] )
to:
[[http://arxiv.org/pdf/physics/0605087  Finding community structure in networks using the eigenvectors of matrices (arxiv version; to appear in PRE)]] by Mark Newman
[[http://arxiv.org/abs/qbio.QM/0411033  Using diffusion on graphs and the information bottleneck ]] by Etay Ziv et al. ([[https://sourceforge.net/project/showfiles.php?group_id=74309&package_id=149722  code via sourceforge]] )
[[http://arxiv.org/abs/physics/0503036 (arxiv version; in PRE)  Finding local community structure in networks]] by Aaron Clauset
[[http://arxiv.org/abs/condmat/0408187 (arxiv version; in PRE)  Finding community structure in very large networks]] by Aaron Clauset, Mark Newman, and Cristopher Moore
Changed lines 13 from:
[[http://arxiv.org/pdf/physics/0605087  Finding community structure in networks using the eigenvectors of matrices]] by Mark Newman
to:
[[http://arxiv.org/pdf/physics/0605087  Finding community structure in networks using the eigenvectors of matrices]] by Mark Newman
[[http://arxiv.org/abs/qbio.QM/0411033  Using diffusion on graphs and the information bottleneck ]] by Etay Ziv et al. ([[https://sourceforge.net/project/showfiles.php?group_id=74309&package_id=149722  code via sourceforge]] )
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[[http://arxiv.org/pdf/physics/0605087  Finding community structure in networks using the eigenvectors of matrices]] by Mark Newman


