Simple Interaction File

Basic text input format used by Cytoscape containing only nodes and interactions. It is an edgelist format with out seperate node records. Allows limited hyperedges (multiple target nodes) Each line is a <source> <relationship type> <target1> <targetN> pair, whitespace delimited. The tag for the edge specifies type, rather than edge id.


Cytoscape project?

Main Site:

Basic Example:

node1 typeA node2
node2 typeB node3 node4 node5